Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., alternative sigma factor RpoH from Pseudomonas stutzeri RCH2

 Score =  347 bits (891), Expect = e-100
 Identities = 178/284 (62%), Positives = 217/284 (76%), Gaps = 3/284 (1%)

Query: 1   MTNQAYPM-ALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLR 59
           MT    P+ ALV   +L++Y+++VN  P+L+ ++ERELA RL Y  D++AA+ ++L+HLR
Sbjct: 1   MTTTLQPVQALVPGANLEAYVQTVNSLPLLTVEQERELAGRLFYHQDLEAARQMVLAHLR 60

Query: 60  FVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLR 119
           FVVH+AR YSGYGL  ADL+QEGN+GLMKAVKRFNPEMGVRLVSFAVHWI+AEIHE++LR
Sbjct: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIRAEIHEFILR 120

Query: 120 NWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQD 179
           NWRIVK+ATTKAQRKLFFNLR  KKRL W NN EV  VA  LGVEP EVREMESRL   D
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVTAVADSLGVEPHEVREMESRLTGHD 180

Query: 180 AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQH 239
            AF+ +A+ D++  AY +P  YLED   D A  LE  +W   +T  L  AL  LDERS+ 
Sbjct: 181 MAFDPAADADDDS-AYQSPAHYLEDHRYDPARQLEDADWSDSSTSSLHTALEGLDERSRD 239

Query: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           I++ RWL++D K TL DLA  Y VSAERIRQLEKNAM KLK ++
Sbjct: 240 ILQQRWLNED-KATLHDLAAKYNVSAERIRQLEKNAMNKLKGSI 282