Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., RNA polymerase, sigma 32 subunit, RpoH from Pseudomonas syringae pv. syringae B728a

 Score =  347 bits (891), Expect = e-100
 Identities = 178/284 (62%), Positives = 217/284 (76%), Gaps = 3/284 (1%)

Query: 1   MTNQAYPM-ALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLR 59
           MT    P  ALV   +L++Y+++VN  P+L+ + ERELAE L+Y+ D+DAA+ ++L+HLR
Sbjct: 1   MTTSLQPAYALVPGANLEAYVQTVNSIPLLTPERERELAESLYYEQDLDAARQMVLAHLR 60

Query: 60  FVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLR 119
           FVVH+AR YSGYGL  ADL+QEGN+GLMKAVKRFNPEMGVRLVSFAVHWIKAEIHE++LR
Sbjct: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120

Query: 120 NWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQD 179
           NWRIVK+ATTKAQRKLFFNLR  KKRL W NN EV  VA  LGVEP EVREMESRL   D
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVHRVAESLGVEPREVREMESRLTGHD 180

Query: 180 AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQH 239
            AF+ +AE D++  A+ +P  YLED   D A  LE  +W  ++T  L  AL  LDERS+ 
Sbjct: 181 MAFDPAAEADDDS-AFQSPANYLEDHRYDPARQLEDSDWTDNSTANLHQALDVLDERSRD 239

Query: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           I+  RWL ++ K TL DLA+ Y VSAERIRQLEK+AM KLK ++
Sbjct: 240 ILYQRWLAEE-KATLHDLAQKYNVSAERIRQLEKSAMNKLKTSI 282