Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase, sigma 38 subunit, RpoS from Pseudomonas syringae pv. syringae B728a

 Score =  106 bits (264), Expect = 8e-28
 Identities = 76/273 (27%), Positives = 142/273 (52%), Gaps = 18/273 (6%)

Query: 14  DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGL 73
           D+   Y+  +   P+LS +EE   A RL   GD    K +I S+LR VV +AR Y   GL
Sbjct: 62  DATQLYLNEIGFSPLLSPEEEVHFA-RLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGL 120

Query: 74  PMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQR 133
            + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R +++      +
Sbjct: 121 SLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHVVK 179

Query: 134 KLFFNLRKSKKRLGWFNN-GEVETVARELGVEPAEVREM---ESRLAAQDAAFEMSAEDD 189
           +L   LR +++     ++    E +A  L     EV+ M     R+++ D +      D 
Sbjct: 180 ELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSL---GPDS 236

Query: 190 ENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDD 248
           +  +  T      +D+ +D  + L+ ++     +Q +   L+ L E+ + +V  R+ L  
Sbjct: 237 DKTLLDT----LTDDRPTDPCELLQDDD----LSQSIDQWLSELTEKQREVVIRRFGLRG 288

Query: 249 DNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
              +TL+D+    G++ ER+RQ++   +++L+E
Sbjct: 289 HESSTLEDVGLEIGLTRERVRQIQVEGLKRLRE 321