Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., RNA polymerase sigma factor RpoD from Synechococcus elongatus PCC 7942

 Score = 97.4 bits (241), Expect = 4e-25
 Identities = 78/316 (24%), Positives = 146/316 (46%), Gaps = 63/316 (19%)

Query: 12  SQDSLDSYIRSVNGYPMLSADEERELAERL------------------------HYKGDI 47
           ++DS+  Y++ +    +L ADEE ELA ++                         +   +
Sbjct: 87  TEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAV 146

Query: 48  D---------------AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKR 92
           D               A   ++ S+LR VV +A+ Y   GL   DL+QEG++GL++A ++
Sbjct: 147 DSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 206

Query: 93  FNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNG 152
           F+ E G +  ++A  WI+  I   +    R +++        L+  + + KK        
Sbjct: 207 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV-----HLYETISRIKK-------- 253

Query: 153 EVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADN 212
             + +++E+G +P E  E+ +R+          A+  +  ++   P+   ED  S L D 
Sbjct: 254 TTKLLSQEMGRKPTE-EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED--SRLGDF 310

Query: 213 LEAENWEAH-------TTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVS 264
           +EA+              + L   L++L  R + ++R R+ LDD    TL+++ +++ V+
Sbjct: 311 IEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVT 370

Query: 265 AERIRQLEKNAMRKLK 280
            ERIRQ+E  A+RKL+
Sbjct: 371 RERIRQIEAKALRKLR 386