Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  175 bits (444), Expect = 9e-49
 Identities = 105/269 (39%), Positives = 155/269 (57%), Gaps = 22/269 (8%)

Query: 27  PMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGL 86
           P L  DEE  LA+      D +A   + +SH+R V+ +A  +  +GLPM DLVQEG+IGL
Sbjct: 18  PYLERDEEHALAQAWRNDNDQEARNKIAMSHMRLVISMAAKFRSFGLPMGDLVQEGHIGL 77

Query: 87  MKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRL 146
           ++A  RF P   VR  ++A  WI+A + +YVLRNW IV+  T+ AQ+ LFFNLR+ + RL
Sbjct: 78  LEAAARFEPSREVRFSTYATWWIRASMQDYVLRNWSIVRGGTSSAQKALFFNLRRLRARL 137

Query: 147 G-----WFNNGEVETVARELGVEPAEVREMESRLAAQDAAFE--MSAEDDENG-----MA 194
                   +    E +A  LGV  A+V+ M++RL+  DA+ +  + + D + G     +A
Sbjct: 138 AQGDRQLTSQAMHEEIAAALGVSLADVQTMDARLSGNDASLQAPIGSGDPDAGARLDFLA 197

Query: 195 YTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARWLDDDNKTTL 254
             AP+   +++ SDL D   A  W       L +AL  L ER   I+RAR L +D   TL
Sbjct: 198 SEAPL--PDEQVSDLIDGERARRW-------LQVALGELSEREMKIIRARRLTEDG-ATL 247

Query: 255 QDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           ++L    G+S ER+RQ+E  A+ KL+ A+
Sbjct: 248 EELGVALGISKERVRQIETRALEKLRAAL 276