Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score = 99.0 bits (245), Expect = 3e-25
 Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 13/235 (5%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRLGWFNNGEVETVARELGVEPA 166
           I+  I   +    R ++I     +   K+    R+    +G       E +A +L +   
Sbjct: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIG--REPTPEELAEKLAMPLE 563

Query: 167 EVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRL 226
           +VR++  ++A +  + E    D+E+         ++EDK++ L  +   +     TT R+
Sbjct: 564 KVRKV-LKIAKEPISLETPVGDEEDSHLGD----FIEDKNALLPIDAAIQANLRETTTRV 618

Query: 227 SMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
              LASL  R + ++R R+ +  +   TL+++ + + V+ ERIRQ+E  A+RKLK
Sbjct: 619 ---LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670