Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  184 bits (467), Expect = 2e-51
 Identities = 108/290 (37%), Positives = 164/290 (56%), Gaps = 13/290 (4%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           M     P     +  L+ Y+  +  +PML   EE  LA+R     D  AA  L+ SHLR 
Sbjct: 1   MARNTLPTIAAGEGGLNRYLDEIRKFPMLEPQEEYMLAKRYQEHDDRKAAHKLVTSHLRL 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           V  +A GY GYGLP+ +++ EGN+GLM+AVK+F P+ G RL ++A+ WIKA I EY+LR+
Sbjct: 61  VAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPDRGFRLATYAMWWIKAAIQEYILRS 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNG-----EVETVARELGVEPAEVREMESRL 175
           W +VK+ TT  Q++LFFNLR+ K R+   + G     +V+ +A  L V   EV  M  RL
Sbjct: 121 WSLVKMGTTANQKRLFFNLRRLKGRIQALDEGDLKPEQVKEIATTLKVSEEEVVSMNRRL 180

Query: 176 AAQDAAFE--MSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASL 233
           +  DA+    + A + ++G        +L D H +    L  ++        L+ A+  L
Sbjct: 181 SG-DASLNAPIKASEGDSGQWQD----WLVDDHDNQEQILIEQDELESRRALLANAMKVL 235

Query: 234 DERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           ++R + I  AR L ++   TL+DL+  + +S ER+RQ+E  A  K++EAV
Sbjct: 236 NDRERRIFEARRLTEE-PITLEDLSTEFDISRERVRQIEVRAFEKVQEAV 284