Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., RNA polymerase factor sigma-32 (RefSeq) from Shewanella amazonensis SB2B

 Score =  372 bits (955), Expect = e-108
 Identities = 194/284 (68%), Positives = 228/284 (80%), Gaps = 8/284 (2%)

Query: 1   MTNQAYPMALV---SQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSH 57
           MT Q   MAL+      SL++YI SVN  PML A++E +LA+RL   GD+ AAK LI+SH
Sbjct: 1   MTGQTQSMALMVPQGASSLEAYIHSVNSMPMLEAEQEYQLAKRLQETGDLQAAKQLIMSH 60

Query: 58  LRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYV 117
           LRFVVHVA+ YSGYGLP ADL+QEGNIGLMKAVKRF+P++GVRLVSFAVHWIKAEIHEYV
Sbjct: 61  LRFVVHVAKSYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV 120

Query: 118 LRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAA 177
           L+NWRIVK+ATTKAQRKLFFNLRK+K+RLGWF++ EV  VA  LGV   +V EMESR+AA
Sbjct: 121 LKNWRIVKVATTKAQRKLFFNLRKAKQRLGWFSDDEVAMVAENLGVSKDDVTEMESRMAA 180

Query: 178 QDAAFEM-SAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDER 236
           QD AF++ +  DD+ G    APV YLED  SDLA N+E +NWE++   RL  A+ +LDER
Sbjct: 181 QDQAFDLVNDHDDDEGF---APVHYLEDHSSDLAANIENDNWESNAQNRLIAAIKTLDER 237

Query: 237 SQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
           SQHI+RARWLDDD K TLQ+LAE Y VSAERIRQLEKNAM KLK
Sbjct: 238 SQHILRARWLDDD-KVTLQELAEQYQVSAERIRQLEKNAMNKLK 280