Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., RNA polymerase sigma-70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 94.0 bits (232), Expect = 8e-24
 Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 25/241 (10%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 382 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 441

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEV 168
           I+  I   +    R ++I     +     N R S++ L            +E+G EP+  
Sbjct: 442 IRQAITRSIADQARTIRIPVHMIETINKLN-RISRQML------------QEMGREPSP- 487

Query: 169 REMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWE----AHTTQ 224
            E+  R+A  +       +  +  ++   P+   ED H  L D +E    E    + T++
Sbjct: 488 EELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSH--LGDFIEDTTLELPLDSATSE 545

Query: 225 RLSMA----LASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKL 279
            L  A    LA L  R   ++R R+ +D +   TL+++ + + V+ ERIRQ+E  A+RKL
Sbjct: 546 SLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 605

Query: 280 K 280
           +
Sbjct: 606 R 606