Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 13/235 (5%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A K +I ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 458 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 517

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRLGWFNNGEVETVARELGVEPA 166
           I+  I   +    R ++I     +   KL    R+    +G       E +A +L +   
Sbjct: 518 IRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIG--REPTPEELAEKLQMPLE 575

Query: 167 EVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRL 226
           +VR++  ++A +  + E    D+E+         ++EDK++     L+A    ++  +  
Sbjct: 576 KVRKV-LKIAKEPISLETPIGDEEDSHLGD----FIEDKNA--VQPLDAA-INSNLRETC 627

Query: 227 SMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
           +  LASL  R + ++R R+ +  +   TL+++ + + V+ ERIRQ+E  A+RKLK
Sbjct: 628 TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 682