Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  214 bits (546), Expect = 1e-60
 Identities = 127/294 (43%), Positives = 178/294 (60%), Gaps = 21/294 (7%)

Query: 1   MTNQAYPMALVSQDS-LDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLR 59
           M+   Y +  VS +  L  Y+  +  +PML+ +EE  LA+RL  +GD DAA  L+ SHLR
Sbjct: 1   MSTYRYKLPAVSDEGGLSRYLTEIKRFPMLTPEEEFMLAKRLQDEGDRDAAHRLVTSHLR 60

Query: 60  FVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLR 119
            V  +A GY  YGLP++DLV EGN+GLMKAVK+F  + G RL ++A+ WIKA I+EY+L 
Sbjct: 61  LVAKIAMGYRHYGLPVSDLVAEGNMGLMKAVKKFEADRGFRLATYAMWWIKASINEYILN 120

Query: 120 NWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNG-----EVETVARELGVEPAEVREMESR 174
           +W +VK+ T  AQ+KLFFNLR+ K +LG +  G     +V+T+A +L V  A+V  M  R
Sbjct: 121 SWSLVKVGTVAAQKKLFFNLRRLKAKLGVYEEGDLSPEDVKTIATQLKVTEADVVMMNRR 180

Query: 175 LAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSM-----A 229
           LA  DA+  +   +D++        +   D   D  DN E E + AH  Q L       A
Sbjct: 181 LAGPDASLNVPVGEDQS--------MDRMDLLMDEGDNQE-EVYAAHEEQSLGNRLLKDA 231

Query: 230 LASLDERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           L++L ER +HI+ AR L  +   TL++L   YGVS ER+RQ+E  A  KL+ AV
Sbjct: 232 LSTLTERERHIITARRLRSE-PVTLEELGGEYGVSRERVRQIENRAFEKLQTAV 284