Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., RNA polymerase sigma factor RpoH from Rhodopseudomonas palustris CGA009

 Score =  197 bits (501), Expect = 2e-55
 Identities = 114/279 (40%), Positives = 164/279 (58%), Gaps = 10/279 (3%)

Query: 10  LVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYS 69
           L  +  L  Y+  +  +PML   +E  LA+R    GD DAA  L+ SHLR V  +A GY 
Sbjct: 10  LNGESGLARYLAEIRKFPMLEPQQEYMLAKRWREHGDRDAAHQLVTSHLRLVAKIAMGYR 69

Query: 70  GYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATT 129
           GYGLP++++V EGN+GLM+AVKRF PE G RL ++A+ WIKA I EY+LR+W +VK+ TT
Sbjct: 70  GYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRSWSLVKMGTT 129

Query: 130 KAQRKLFFNLRKSKKRLGWFNNG-----EVETVARELGVEPAEVREMESRLAAQDAAFEM 184
             Q+KLFFNLRK+K ++   + G     +V+ +A  LGV   +V +M  RL    +    
Sbjct: 130 ANQKKLFFNLRKAKSKISALDEGDLHPDQVKLIATRLGVTEQDVVDMNRRLGGDASLNAP 189

Query: 185 SAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRAR 244
             +D E G      V     + + +A++ E +   A     L+ A+  L+ R + I  AR
Sbjct: 190 IRDDGEPGEWQDWLVDQSPSQEAVMAEHEELDQRRA----ALNGAIQVLNPRERRIFEAR 245

Query: 245 WLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
            L D+   TL+DLA  +GVS ER+RQ+E  A  K++ AV
Sbjct: 246 RLADE-PMTLEDLASEFGVSRERVRQIEVRAFEKVQSAV 283