Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RNA polymerase sigma-32 factor RpoH from Phaeobacter inhibens DSM 17395

 Score =  212 bits (539), Expect = 9e-60
 Identities = 118/290 (40%), Positives = 175/290 (60%), Gaps = 8/290 (2%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           M N A   A   +  L+ Y++ +  +P+L  +EE  LA+R   + D  +A  ++ SHLR 
Sbjct: 1   MANYANLPAPTPEGGLNRYLQEIRKFPLLEPEEEYMLAKRWVEEQDSASAHKMVTSHLRL 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
              +A GY GYGLP A+++ E N+GLM+AVKRF+PE G RL ++A+ WI+A I EY+LR+
Sbjct: 61  AAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRS 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGE-----VETVARELGVEPAEVREMESRL 175
           W +VK+ TT AQ+KLFFNLRK+K R+G    G+     V+ +A +LGV   EV  M  R+
Sbjct: 121 WSLVKLGTTSAQKKLFFNLRKAKARIGALEEGDLHPDSVKKIATDLGVTETEVISMNRRM 180

Query: 176 AAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDE 235
           +  DA+   +   +  G        +LED+ +D A + EA +      + L+ AL  L++
Sbjct: 181 SGGDASLNATVGSEGEGTMQWQD--WLEDEDADQAGDYEARDELEARRELLASALEVLND 238

Query: 236 RSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAVGE 285
           R + I+  R L D  K TL+DL+  YGVS ERIRQ+E  A  KL++ + E
Sbjct: 239 REKDILTQRRLADQAK-TLEDLSTQYGVSRERIRQIEVRAFEKLQKKMRE 287