Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., RNA polymerase sigma-32 factor RpoH from Phaeobacter inhibens DSM 17395

 Score =  148 bits (374), Expect = 1e-40
 Identities = 89/269 (33%), Positives = 152/269 (56%), Gaps = 21/269 (7%)

Query: 28  MLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLM 87
           +L A+ E +LA     + D+ A   LI +++R  + +A  +  YG PM DL+QE  +GLM
Sbjct: 20  LLDAETELQLAYAWRDERDVQALHRLINAYMRLAISMASKFRRYGAPMNDLIQEAGLGLM 79

Query: 88  KAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLG 147
           KA  +F+P+ GVR  ++AV WIKA I +YV+RNW +V+  +T +Q+ LFFN+R+ + +L 
Sbjct: 80  KAADKFDPDRGVRFSTYAVWWIKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQAQLE 139

Query: 148 WFNNGE---------VETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAP 198
                +          + +A E+GV   +V+ M+ RLA  D +       ++ G  +   
Sbjct: 140 RQAQSDGARLDKHQLHQQIATEIGVPLRDVQMMDGRLAGSDFSLNAVQSSEDEGREW--- 196

Query: 199 VLYLEDKHSDLADNLEAENWEAHTTQRLS----MALASLDERSQHIVRARWLDDDNKTTL 254
           +  LED  +  A+ +E    E+H T++L      A+ +L+ER + I+  R L +  + TL
Sbjct: 197 IEALEDDSAQAAELVE----ESHDTRQLRDWLVEAMQALNERERFIITERKLREKPR-TL 251

Query: 255 QDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           + L     +S ER+RQLE  A +K+++++
Sbjct: 252 ESLGNELDLSKERVRQLEAGAFQKMRKSL 280