Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., RNA polymerase factor sigma-32 (RefSeq) from Shewanella loihica PV-4

 Score =  367 bits (943), Expect = e-106
 Identities = 190/283 (67%), Positives = 231/283 (81%), Gaps = 6/283 (2%)

Query: 1   MTNQAYPMALV---SQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSH 57
           MTNQ   MAL+   S  SL++YI S +  PML A+EE ELA+RL   GDI AAK LI+SH
Sbjct: 1   MTNQTQSMALMVPQSSSSLEAYIHSAHNIPMLEANEEYELAKRLQETGDIQAAKQLIMSH 60

Query: 58  LRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYV 117
           LRFV+HVA+GY+GYGLP ADL+QEGNIGLMKAVKRF+P++GVRLVSFAVHWIKAEIHEYV
Sbjct: 61  LRFVIHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV 120

Query: 118 LRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAA 177
           L+NWRIVK+ATTKAQRKLFFNLRK+KKRLGWF++ EV  VA  LGV  ++V EMESR+AA
Sbjct: 121 LKNWRIVKVATTKAQRKLFFNLRKAKKRLGWFSDEEVTMVAENLGVSKSDVTEMESRMAA 180

Query: 178 QDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERS 237
           QD AF++++++D++     APV YLED  SD+A  +E +N+EA    RL  A+ +LDERS
Sbjct: 181 QDPAFDLASDNDDD--QDYAPVHYLEDHSSDIASQVENDNFEADNQTRLLAAIKTLDERS 238

Query: 238 QHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
           QHI++ARWLD++ KTTLQ+LA  Y VSAERIRQLEKNAM KLK
Sbjct: 239 QHILQARWLDEE-KTTLQELAATYQVSAERIRQLEKNAMNKLK 280