Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., alternative sigma factor RpoH from Dechlorosoma suillum PS

 Score =  296 bits (757), Expect = 5e-85
 Identities = 150/266 (56%), Positives = 194/266 (72%), Gaps = 2/266 (0%)

Query: 15  SLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLP 74
           +LD+YI++   +PMLS  EE  LA RL  + D+DAA+ L+LSHLR V+ +ARGY GYGLP
Sbjct: 17  NLDAYIQAARRFPMLSEAEEFALARRLREEDDVDAARQLVLSHLRLVIAIARGYLGYGLP 76

Query: 75  MADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRK 134
            ADL+QEGNIGLMKAVKRF+P  GVRLVSFA+HWIKAEIHEY+L+NWR+VK+ATTKAQRK
Sbjct: 77  HADLIQEGNIGLMKAVKRFDPSRGVRLVSFAMHWIKAEIHEYILKNWRLVKVATTKAQRK 136

Query: 135 LFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMA 194
           LFFNLR  K         EV+ +A +LGV+  EV EME+R+  +D A + S +D+++   
Sbjct: 137 LFFNLRSLKASSDTLTPAEVDEIAYKLGVKAEEVVEMETRMGGRDLALDGSPDDEDDNR- 195

Query: 195 YTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARWLDDDNKTTL 254
             AP+ YL D  ++    LEA  ++   +  L  ALA LDERS+ IV ARWLD++N  TL
Sbjct: 196 -VAPIAYLADSAAEPTQVLEAREYDRLQSDGLQQALAGLDERSRRIVEARWLDEENPATL 254

Query: 255 QDLAEMYGVSAERIRQLEKNAMRKLK 280
            DLA  +GVSAERIRQ+E  A++K+K
Sbjct: 255 HDLAAEFGVSAERIRQIEVKALQKMK 280