Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., RNA polymerase sigma factor SigB from Mycobacterium tuberculosis H37Rv

 Score =  101 bits (252), Expect = 2e-26
 Identities = 70/236 (29%), Positives = 128/236 (54%), Gaps = 15/236 (6%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A + L+ ++LR VV +A+ Y+G G+P+ DL+QEGN+GL++A+++F+   G +  ++A  W
Sbjct: 86  ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWW 145

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQR--KLFFNLRKSKKRLGWFNNGEVETVARELGVEPA 166
           I+  I   +    R +++     ++  KL    R+  + LG       E +A E G+   
Sbjct: 146 IRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLG--REATDEELAAESGIPID 203

Query: 167 EVREMESRLAAQDAAFEMSAEDDENGMAYTAPV-LYLEDKHSDLADNLEAENWEAHTTQR 225
           ++ ++    +    + +M    +E      AP+  ++ED  +  A+N        HT  R
Sbjct: 204 KINDLLEH-SRDPVSLDMPVGSEEE-----APLGDFIEDAEAMSAENAVIAEL-LHTDIR 256

Query: 226 LSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
               LA+LDER   ++R R+ LDD    TL  + +++G+S ER+RQ+E++ M KL+
Sbjct: 257 --SVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 310