Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., RNA polymerase sigma factor SigA (sigma-A) from Mycobacterium tuberculosis H37Rv

 Score =  105 bits (262), Expect = 2e-27
 Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 43/302 (14%)

Query: 12  SQDSLDSYIRSVNGYPMLSADEERELAER-------------LHYKG------------- 45
           S DS+ +Y++ +    +L+A+EE ELA+R             L  +G             
Sbjct: 224 SADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMW 283

Query: 46  ---DIDAAKGLIL-SHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRL 101
              D D AK  +L ++LR VV +A+ Y+G G+   DL+QEGN+GL++AV++F+   G + 
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343

Query: 102 VSFAVHWIKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRLGWFNNGEVETVAR 159
            ++A  WI+  I   +    R ++I     +   KL    R+  + LG       E +A+
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLG--REPTPEELAK 401

Query: 160 ELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWE 219
           E+ + P +V E++ + A +  + + +  D+ +         ++ED  + +A  ++A ++ 
Sbjct: 402 EMDITPEKVLEIQ-QYAREPISLDQTIGDEGDSQLGD----FIEDSEAVVA--VDAVSFT 454

Query: 220 AHTTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRK 278
               Q L   L +L ER   +VR R+ L D    TL ++ ++YGV+ ERIRQ+E   M K
Sbjct: 455 LLQDQ-LQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSK 513

Query: 279 LK 280
           L+
Sbjct: 514 LR 515