Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 71/238 (29%), Positives = 127/238 (53%), Gaps = 13/238 (5%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A + LI S+LR VV +A+ Y+  GL   DL+QEGNIGLMKAV +F  + G +  ++A  W
Sbjct: 352 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 411

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRLGWFNNGEVETVARELGVEPA 166
           I+  I   +    R ++I     +   KL    R   + LG   +   E +A  +     
Sbjct: 412 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELG--RDPTPEEIAERMDYPID 469

Query: 167 EVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRL 226
           +V+++  ++A +  + E    D+E+         ++EDK + +A   E  N     ++++
Sbjct: 470 KVKKV-LKIAKEPISLETPIGDEEDSSLGD----FIEDKKA-VAPAEEVVN--TKLSEQI 521

Query: 227 SMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +  LA L  R + ++R R+ + + +  TL+++ +++ V+ ERIRQ+E  A+RKL+  V
Sbjct: 522 ASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPV 579



 Score = 25.0 bits (53), Expect = 0.004
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 12  SQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLI 54
           S D +  Y+R +   P+L  D E ++A+++   G+ D    L+
Sbjct: 98  STDPVRMYLREMGAVPLLDRDGEVQIAKKIEL-GEQDVLYALV 139