Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., RNA polymerase, sigma 32 subunit, RpoH from Marinobacter adhaerens HP15

 Score =  357 bits (915), Expect = e-103
 Identities = 176/276 (63%), Positives = 219/276 (79%), Gaps = 2/276 (0%)

Query: 10  LVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYS 69
           LV   +L+SYI++ +  P+L+ DEERELAERLHY+GD++AA+ L++SHLRFV+H+AR YS
Sbjct: 11  LVPGQNLESYIQAASRIPVLTVDEERELAERLHYEGDVEAARQLVMSHLRFVIHIARSYS 70

Query: 70  GYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATT 129
           GYGL  ADL+QEGN+GLMKAVKRFNPE GVRLVSFAVHWIKAEIHE++LRNWRIVK+ATT
Sbjct: 71  GYGLAQADLIQEGNVGLMKAVKRFNPEYGVRLVSFAVHWIKAEIHEFILRNWRIVKVATT 130

Query: 130 KAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDD 189
           KAQRKLFFNLR  KK+L W ++ E+  VA +LGVEP  VREME RLA+QD AF+   +DD
Sbjct: 131 KAQRKLFFNLRSQKKKLAWLSHDELNAVAEDLGVEPRVVREMEGRLASQDTAFD-GPQDD 189

Query: 190 ENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARWLDDD 249
           ++  AY AP  YLED  S+ A  LE  +W   +  RL  AL  LDERSQ I+R RWL  +
Sbjct: 190 DDDNAYQAPAYYLEDARSNPATQLENADWSDDSNGRLMQALGQLDERSQDILRERWL-SE 248

Query: 250 NKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAVGE 285
           +K+TL +LA+ YGVSAERIRQLEKNAM+K++  + E
Sbjct: 249 SKSTLHELADRYGVSAERIRQLEKNAMKKIRIQMSE 284