Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., RNA polymerase sigma-32 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  371 bits (953), Expect = e-108
 Identities = 195/284 (68%), Positives = 229/284 (80%), Gaps = 8/284 (2%)

Query: 1   MTNQAYPMALV---SQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSH 57
           MT Q   MAL       SL++YI SV    ML A+ E ELA+RL   GD+ AAK LI+SH
Sbjct: 1   MTFQTQSMALTVPQGSSSLEAYIHSVTSMNMLDAETEYELAKRLQETGDLQAAKQLIMSH 60

Query: 58  LRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYV 117
           LRFVVHVA+GY+GYGLP ADL+QEGNIGLMKAVKRF+P++GVRLVSFAVHWIKAEIHEYV
Sbjct: 61  LRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV 120

Query: 118 LRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAA 177
           L+NWRIVK+ATTKAQRKLFFN+RK+K RLGWF++ EV  VA  LGV  A+V EMESR+AA
Sbjct: 121 LKNWRIVKVATTKAQRKLFFNIRKAKTRLGWFSDDEVTMVAENLGVSKADVTEMESRMAA 180

Query: 178 QDAAFEMSAE-DDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDER 236
           QD AF++S++ DDE+     APV YLED  SDLA+N+E +NWE++   RL  A+ +LDER
Sbjct: 181 QDPAFDLSSDNDDEHDF---APVHYLEDHSSDLAENIENDNWESNAQGRLLSAIKTLDER 237

Query: 237 SQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
           SQHI+RARWLDDD KTTLQ+LAE Y VSAERIRQLEKNAM KLK
Sbjct: 238 SQHILRARWLDDD-KTTLQELAETYQVSAERIRQLEKNAMNKLK 280