Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., RNA polymerase sigma-38 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.8 bits (247), Expect = 7e-26
 Identities = 75/285 (26%), Positives = 139/285 (48%), Gaps = 36/285 (12%)

Query: 14  DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGL 73
           D+   Y+  +   P+LSA+EE   + +   KG   +   +I S+LR VV +AR Y+  GL
Sbjct: 52  DATQLYLGEIGFSPLLSAEEEVYFSRKA-LKGCEKSRNRMIESNLRLVVKIARRYNNRGL 110

Query: 74  PMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVK--IATTKA 131
            + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R ++  I   K 
Sbjct: 111 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKE 170

Query: 132 QRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREM---ESRLAAQD--------- 179
                   R+  ++L   +    E +A +L V   +V  M     ++ + D         
Sbjct: 171 LNVYLRTARELAQKLD--HEPTAEEIAEKLQVSSVDVSRMLKLNEKITSVDVPLGGDNDK 228

Query: 180 AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQH 239
           A  ++ A+DD  G  Y         +  D+++++     E +T QR            + 
Sbjct: 229 ALLDVLADDDNVGPDYKV-------QDEDISNSVVKWLNELNTKQR------------EV 269

Query: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAVG 284
           + R   L     +TL+D+    G++ ER+RQ++  A+++L++ +G
Sbjct: 270 LARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLRDLLG 314