Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., RNA polymerase sigma factor RpoH from Klebsiella michiganensis M5al

 Score =  413 bits (1061), Expect = e-120
 Identities = 203/283 (71%), Positives = 240/283 (84%), Gaps = 1/283 (0%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           MT     +AL    +L+SYIR+ N +PMLSADEERELAE+LHY+GD++AAK LILSHLRF
Sbjct: 1   MTKDMQTLALAPVGNLESYIRAANTWPMLSADEERELAEKLHYQGDLEAAKKLILSHLRF 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           VVH+AR YSGYGLP ADL+QEGNIGLMKAV+RFNPE+GVRLVSFAVHWIKAEIHEYVLRN
Sbjct: 61  VVHIARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDA 180
           WRIVK+ATTKAQRKLFFNLRK+K+RLGWFN  EVE VARELGV   +VREMESR+AAQD 
Sbjct: 121 WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVSSKDVREMESRMAAQDM 180

Query: 181 AFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHI 240
            F+MS+ DDE+     APVLYL+DK S+ AD +E +NWE     +L+ A+  LDERSQ I
Sbjct: 181 TFDMSS-DDESDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANKLTDAMQGLDERSQDI 239

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +RARWLD+DNK+TLQ+LA+ YGVSAER+RQLEKNAM+KL+ A+
Sbjct: 240 IRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282