Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., RNA polymerase sigma factor RpoD from Klebsiella michiganensis M5al

 Score = 92.8 bits (229), Expect = 2e-23
 Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 21/239 (8%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 376 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 435

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEV 168
           I+  I   +    R ++I     +     N R S++ L            +E+G EP   
Sbjct: 436 IRQAITRSIADQARTIRIPVHMIETINKLN-RISRQML------------QEMGREPTP- 481

Query: 169 REMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKH--SDLADNLEAENWEAHTTQRL 226
            E+  R+   +       +  +  ++   P+   ED H    + DN      ++ TT+ L
Sbjct: 482 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPLDSATTESL 541

Query: 227 SMA----LASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
             A    LA L  R   ++R R+ +D +   TL+++ + + V+ ERIRQ+E  A+RKL+
Sbjct: 542 RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 600