Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Klebsiella michiganensis M5al

 Score =  100 bits (250), Expect = 3e-26
 Identities = 74/282 (26%), Positives = 134/282 (47%), Gaps = 36/282 (12%)

Query: 14  DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGL 73
           D+   Y+  +   P+L+A+EE   A R   +GD+ + + +I S+LR VV +AR Y   GL
Sbjct: 56  DATQLYLGEIGYSPLLTAEEEVYFARRA-LRGDVASRRRMIESNLRLVVKIARRYGNRGL 114

Query: 74  PMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVK--IATTKA 131
            + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R ++  I   K 
Sbjct: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174

Query: 132 QRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREM---ESRLAAQD--------- 179
                   R+   +L   +    E +A +L     +V  M     R+ + D         
Sbjct: 175 LNVYLRTARELSHKLD--HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232

Query: 180 AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQH 239
           A  ++ A++ +NG   T        +  D+  ++    +E +  QR            + 
Sbjct: 233 ALLDILADEKDNGPEDTT-------QDDDMKQSIVKWQFELNAKQR------------EV 273

Query: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
           + R   L      TL+D+    G++ ER+RQ++   +R+L+E
Sbjct: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315