Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 71/238 (29%), Positives = 126/238 (52%), Gaps = 13/238 (5%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A + LI S+LR VV +A+ Y+  GL   DL+QEGNIGLMKAV +F  + G +  ++A  W
Sbjct: 352 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 411

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRLGWFNNGEVETVARELGVEPA 166
           I+  I   +    R ++I     +   KL    R   + LG   +   E +A  +     
Sbjct: 412 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELG--RDPTPEEIAERMDYPID 469

Query: 167 EVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRL 226
           +V+++  ++A +  + E    D+E+         ++EDK + +A   E  N      +++
Sbjct: 470 KVKKV-LKIAKEPISLETPIGDEEDSSLGD----FIEDKKA-VAPAEEVVN--TKLGEQI 521

Query: 227 SMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +  LA L  R + ++R R+ + + +  TL+++ +++ V+ ERIRQ+E  A+RKL+  V
Sbjct: 522 ASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPV 579