Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., sigma 70 family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  177 bits (449), Expect = 3e-49
 Identities = 99/273 (36%), Positives = 164/273 (60%), Gaps = 10/273 (3%)

Query: 13  QDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYG 72
           +DSL  Y+R ++ +PML  +EE ELA+R+   GD DAA  L+ SHLR VV +A  +    
Sbjct: 74  KDSLHLYLREISRFPMLKPEEEYELAKRVRETGDGDAAFRLVSSHLRLVVKIAMDFQRRW 133

Query: 73  LP-MADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKA 131
           +  + DL+QEGN+GLM+AV +F+PE G++   +A  WIKA I ++++ NWR+VKI TT+A
Sbjct: 134 MQNVLDLIQEGNVGLMRAVNKFDPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGTTQA 193

Query: 132 QRKLFFNLRKSKKRL---GWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAED 188
           QRKLF+NL K +++L   G+  + +  T++  L V   +V EME RL A D + ++   D
Sbjct: 194 QRKLFYNLNKERQKLILQGY--DPDAATLSERLNVTKEQVVEMEQRLDASDVSLDIPVGD 251

Query: 189 DENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARWLDD 248
           +  G    + + +L      + D L      +    RL   +  L ++   I++ R L +
Sbjct: 252 EGGG---ASRMDFLPALGPGIEDALSNHEIASMVQNRLQSIIPKLSDKEVDILQNRLLSE 308

Query: 249 DNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
           +   TL+++ E Y ++ ER+RQ+E   ++K+++
Sbjct: 309 E-PVTLREIGEKYDITRERVRQIEARLLQKIRD 340