Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  103 bits (258), Expect = 8e-27
 Identities = 81/274 (29%), Positives = 143/274 (52%), Gaps = 19/274 (6%)

Query: 14  DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAA---KGLILSHLRFVVHVARGYSG 70
           + L S +  V  Y  +   E R + +++  KG+ +A    K ++ ++LR V+ +A+ Y+ 
Sbjct: 389 EELRSDMAQVGTYVGVDITEFRRIVQQVQ-KGEKEARQAKKEMVEANLRLVISIAKKYTN 447

Query: 71  YGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTK 130
            GL   DL+QEGNIGLMKAV +F    G +  ++A  WI+  I   +    R ++I    
Sbjct: 448 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 507

Query: 131 AQ--RKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAED 188
            +   KL    R+    +G       E +A +L +   +VR++  ++A +  + E    D
Sbjct: 508 IETINKLVRTGRQMLHEIG--REPTPEELAEKLQMPLEKVRKV-MKIAKEPISLETPIGD 564

Query: 189 DENGMAYTAPVLYLEDKHSDL-ADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-L 246
           +E+         ++EDK++ L  D+   EN +  TT+     LASL  R + ++R R+ +
Sbjct: 565 EEDSQLGD----FIEDKNAVLPLDSAIQENLKETTTR----VLASLTPREERVLRMRFGI 616

Query: 247 DDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
             +   TL+++ + + V+ ERIRQ+E  A+RKLK
Sbjct: 617 GMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 650