Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000

 Score =  100 bits (249), Expect = 9e-26
 Identities = 74/255 (29%), Positives = 135/255 (52%), Gaps = 17/255 (6%)

Query: 32  DEERELAERLHYKGDIDAA---KGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMK 88
           D+ R + + +  KG+ +A    K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMK
Sbjct: 395 DDYRRIVQTVQ-KGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 453

Query: 89  AVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRL 146
           AV +F    G +  ++A  WI+  I   +    R ++I     +   K+    R+    +
Sbjct: 454 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEI 513

Query: 147 GWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKH 206
           G       E +A +L +   +VR++  ++A +  + E    D+E+         ++EDK+
Sbjct: 514 G--REPTPEELAEKLAMPLEKVRKV-LKIAKEPISLETPIGDEEDSHLGD----FIEDKN 566

Query: 207 SDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSA 265
           + L  +   ++    TT R+   LASL  R + ++R R+ +  +   TL+++ + + V+ 
Sbjct: 567 AILPIDAAIQSNLRETTTRV---LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTR 623

Query: 266 ERIRQLEKNAMRKLK 280
           ERIRQ+E  A+RKLK
Sbjct: 624 ERIRQIEAKALRKLK 638