Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RNA polymerase nonessential primary-like sigma factor from Paraburkholderia graminis OAS925

 Score =  112 bits (280), Expect = 1e-29
 Identities = 81/287 (28%), Positives = 152/287 (52%), Gaps = 20/287 (6%)

Query: 4   QAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVH 63
           +A   A ++ D++  Y+  ++  P+L+ +EE++ + RL   G+ +A + +I  +LR VV 
Sbjct: 69  RALLQAELTADTIQHYLNRISVKPLLTVEEEQKYS-RLAKAGEFEARQVMIERNLRLVVS 127

Query: 64  VARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRI 123
           +A+GY   G+P+ DL++EGN+GLM A+++F+P  G R  ++A  WI+  I   ++   R 
Sbjct: 128 IAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPTRGFRFSTYATWWIRQSIERAIMNQART 187

Query: 124 VKIATTKAQRKLFFNLR-KSKKRLGWFNNGE--------VETVARELGVEPAEVREMESR 174
           V++      R+L   LR K        N+GE        ++ +A   G    EV ++   
Sbjct: 188 VRL-PVHVIRELNQVLRAKRHLEKNSMNSGEAAERRDASIDDIAYLTGKTTDEVTDI--- 243

Query: 175 LAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLD 234
           LA  +    + A  D   +   + +L L       + + E ++ E  T  R    LA L 
Sbjct: 244 LALNEHTASLDAPLD---LDPASSLLDLLSDDQSQSPDAEVQHRELETLTR--AWLARLS 298

Query: 235 ERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
           ++ +H++  R+ L+     TL++LA+  G++ ER+RQ+++ A+ +LK
Sbjct: 299 DKHRHVIERRFGLNHIEPATLEELADEMGLTRERVRQIQQEALVRLK 345