Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., RNA polymerase factor sigma-32 (RefSeq) from Shewanella sp. ANA-3

 Score =  372 bits (956), Expect = e-108
 Identities = 194/283 (68%), Positives = 228/283 (80%), Gaps = 6/283 (2%)

Query: 1   MTNQAYPMALV---SQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSH 57
           MT Q   MAL       SL++YI SV    ML A+ E ELA+RL   GD+ AAK LI+SH
Sbjct: 1   MTFQTQSMALTVPQGSSSLEAYIHSVTSMTMLDAETEYELAKRLQETGDLQAAKQLIMSH 60

Query: 58  LRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYV 117
           LRFVVHVA+GYSGYGLP ADL+QEGNIGLMKAVKRF+P++GVRLVSFAVHWIKAEIHEYV
Sbjct: 61  LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV 120

Query: 118 LRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAA 177
           L+NWRIVK+ATTKAQRKLFFN+RK+K RLGWF++ EV  VA  LGV  A+V EMESR+AA
Sbjct: 121 LKNWRIVKVATTKAQRKLFFNIRKAKTRLGWFSDDEVAMVAENLGVSKADVTEMESRMAA 180

Query: 178 QDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERS 237
           QD AF++S+++D+      APV YLED  SDLA+N+E +NWE++   RL  A+ +LDERS
Sbjct: 181 QDPAFDLSSDNDDE--QDFAPVHYLEDHSSDLAENIENDNWESNAQGRLLSAIKTLDERS 238

Query: 238 QHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
           QHI+RARWLDDD KTTLQ+LAE Y VSAERIRQLEKNAM KLK
Sbjct: 239 QHILRARWLDDD-KTTLQELAETYQVSAERIRQLEKNAMNKLK 280