Pairwise Alignments

Query, 391 a.a., signal recognition particle-docking protein FtsY from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis JJ

 Score =  149 bits (375), Expect = 2e-40
 Identities = 92/286 (32%), Positives = 162/286 (56%), Gaps = 23/286 (8%)

Query: 111 FKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDG--------EALYG 162
           F  KK+  ++ +++++ L+ +DV +    K++ N++    R+ + +         E +  
Sbjct: 21  FVDKKLVKEVIKDIQKALIQSDVNV----KLVFNMSKEIERKAIDEAPPKGLSKKEHIVK 76

Query: 163 LLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAA 222
           ++ +E+ ++L +  Q L +D  KK  VIL++G+ G GKTT+  KLA+  Q +G +  L A
Sbjct: 77  IVYDELVKLLGETTQKLELDPSKKS-VILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIA 135

Query: 223 GDTFRAAAVEQLQVWGERNQVPVIAQHTGADS-ASVIYDAIEAAKARGIDVVIADTAGRL 281
            D +R AA +QL+   E+  VP+    T   +   +  + +E  K + +DVVI DTAGR 
Sbjct: 136 ADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME--KLKKVDVVIIDTAGRH 193

Query: 282 QNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSD-VAPITGITLT 340
           + +  L+ E++++       D + P+EI+L +D   GQ A +QAK F + V+ I  I +T
Sbjct: 194 KEEEGLLAEMKEMK------DLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVT 247

Query: 341 KLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDAL 386
           KLDG+AKGG   +   +   PI++IG GE +D+L  F  ++FI  +
Sbjct: 248 KLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRI 293