Pairwise Alignments

Query, 391 a.a., signal recognition particle-docking protein FtsY from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  160 bits (404), Expect = 9e-44
 Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 21/297 (7%)

Query: 89  FARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEE---QLLIADVGMDTTSKIIANL 145
           F  L   LSRT  NI        +G+  ++++ E L E    LL ADV +    + + N+
Sbjct: 2   FENLTDRLSRTLKNISG------RGRLTEENVKETLREVRMALLEADVALPVVREFVNNV 55

Query: 146 TARASRQQ----LRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKT 201
             RA  Q+    L  G+A   +++ E+ + + +  Q L + T+  P V++M G+ G GKT
Sbjct: 56  KERAVGQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQP-PAVVMMAGLQGAGKT 114

Query: 202 TTIGKLAKQFQAQGKK-VMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYD 260
           T++ KL K  + + KK V++ + D +R AA++QL+       V             +   
Sbjct: 115 TSVAKLGKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKA 174

Query: 261 AIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQN 320
           AI  AK + IDVVI DTAGRL     +M+E++ +   +K      P E +  +DA TGQ+
Sbjct: 175 AIAHAKLKFIDVVILDTAGRLHVDEAMMDEIKALHAALK------PIETLFVVDAMTGQD 228

Query: 321 AISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPF 377
           A + AK F++  P+TG+ LTK+DG A+GG   +I      PI+++GVGEK D L PF
Sbjct: 229 AANTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPF 285