Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 203 a.a., Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  159 bits (402), Expect = 3e-44
 Identities = 91/195 (46%), Positives = 115/195 (58%), Gaps = 3/195 (1%)

Query: 5   RQPNPSQKKAPTG--QVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNAR 62
           R  N S+K    G  Q+RII G WR R+L   DA GLRPT DRV+ETLFNWLA  V  AR
Sbjct: 3   RPSNSSKKPVHNGVNQLRIIGGEWRSRRLSFPDAPGLRPTPDRVRETLFNWLAPYVAGAR 62

Query: 63  CLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFL- 121
            LD FAGSG L  E  SR A+    L+ + LA   LK ++ +L+    ++   DAL +L 
Sbjct: 63  VLDPFAGSGALFLEALSRGASMGQALDASNLAVSSLKEHLGTLRCTVGQVQTADALRYLD 122

Query: 122 RQSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHLH 181
            Q   P+D+VF+DPPF Q LL     LLE+  WLA  A +Y E E       LP +W LH
Sbjct: 123 SQPATPFDLVFLDPPFNQNLLPTVCTLLEERQWLAEDAWVYTESETAPSTLGLPGNWRLH 182

Query: 182 REKSAGQVCYRLFIR 196
           RE+ +G+V Y L+ R
Sbjct: 183 REQKSGRVYYALWQR 197