Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 184 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 72.0 bits (175), Expect = 6e-18
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 29  RKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTML 88
           R L      G RPT  RV+  +FN     VP+ R LDL AGSG +G E   R A+ V  +
Sbjct: 9   RSLQTPAGLGTRPTPSRVRNAIFNVWQFAVPDCRWLDLCAGSGAMGGEALLRGASVVWGI 68

Query: 89  ELNPLAFQQLKTNVQSLKA--ENIELIHTDALAFLRQSGKP-YDVVFIDPPFRQGLLQET 145
           E +  A + +  N Q L+A  + + L+  +    L     P +D+++ DPP+   L +  
Sbjct: 69  EQSAQACRAIAQNWQKLQAPDQEVRLLKGEICRLLASLDAPAFDLIYFDPPYDGDLYEPV 128

Query: 146 TQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHLHREKSAGQVCYRL 193
             LL +   L  Q  I +E   +  +  LPP++ L + +  G     L
Sbjct: 129 LALLAERSLLHEQGEIAVEHRPDRAIA-LPPNFELKQCRRYGSTAVSL 175