Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  188 bits (478), Expect = 5e-53
 Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 1/179 (0%)

Query: 16  TGQVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCLDLFAGSGGLGF 75
           +GQVRII G WR RKLP+ D EGLRPTTDRV+ETLFNW+A ++P+AR LD F GSG L  
Sbjct: 22  SGQVRIIGGQWRSRKLPIKDLEGLRPTTDRVRETLFNWIAADLPHARVLDCFGGSGALAL 81

Query: 76  ECASRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFLRQ-SGKPYDVVFID 134
           E  SR A+   + EL   A  QLK N+Q+LK +  E+++ D LA L   + + +D+VFID
Sbjct: 82  EALSRYASFAKVFELQRDAANQLKINLQTLKCDCAEVVNGDTLALLAAGTAEGFDIVFID 141

Query: 135 PPFRQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHLHREKSAGQVCYRL 193
           PPFR+GL + T   L+ +GWL   A++Y+E E EL    LPP +   + K+AGQVCYRL
Sbjct: 142 PPFRKGLAEATLLALKDHGWLKEDALVYLETESELAAMPLPPGFTELKHKTAGQVCYRL 200