Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score = 52.8 bits (125), Expect = 8e-12
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 45  RVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQS 104
           R+  T   W+ +  P +   DLF G GG G  CA+ ++  VT +E+   A    KT+  +
Sbjct: 220 RLYATAAKWVDELSPKS-LWDLFCGVGGFGLHCAN-ESLPVTGIEIEAEAIDCAKTSAAA 277

Query: 105 LKAENIELIHTDALAFL--RQSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIY 162
           +  +N+     D+  F   +Q+ +  +V+ ++PP R+G+ +E  + L   G   P+A+IY
Sbjct: 278 MGLDNLSFAALDSTDFAMGQQAQEVPEVIIVNPP-RRGIGEELCERLSAFG---PRAIIY 333

Query: 163 IECEKE 168
             C  E
Sbjct: 334 SSCNPE 339