Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 184 a.a., ribosomal RNA small subunit methyltransferase D from Phaeobacter inhibens DSM 17395

 Score = 94.0 bits (232), Expect = 2e-24
 Identities = 68/186 (36%), Positives = 96/186 (51%), Gaps = 10/186 (5%)

Query: 19  VRIISGLWRGRKLPV---HDAEG-LRPTTDRVKETLFNWLAQEVP--NARCLDLFAGSGG 72
           +RII+G +RGR L      DA   LRPTTDRV+E+LFN L+  V     R LDLFAG+G 
Sbjct: 1   MRIIAGDFRGRALTSVGKGDAGAHLRPTTDRVRESLFNVLSHLVDFDGLRVLDLFAGTGA 60

Query: 73  LGFECASRQANQVTMLELNPLAFQQLKTNVQSLKAEN-IELIHTDALAFLRQSGKPYDVV 131
           LG E  SR A +   ++   ++   +  N+  L+ ++   LI  DA       G P DV+
Sbjct: 61  LGLEALSRGAAEAVFVDDGRVSQGLITKNIDLLRIKDRARLIRRDATRLPVNEGAPCDVI 120

Query: 132 FIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHLHREKSAGQVCY 191
           F+DPP+ + L Q+      + GWLA  A++  E   E    + P  + LH  +  G    
Sbjct: 121 FLDPPYGKSLGQKALAAATKGGWLAEDALVVWE---ESSPMQPPEGFTLHDSRKYGDTHV 177

Query: 192 RLFIRE 197
            L  RE
Sbjct: 178 TLLWRE 183