Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 195 a.a., putative methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  185 bits (469), Expect = 5e-52
 Identities = 94/186 (50%), Positives = 121/186 (65%), Gaps = 1/186 (0%)

Query: 10  SQKKAPTGQVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCLDLFAG 69
           ++ +  +GQVRII+G WR RKLP+ D EGLRPTTDRV+ETLFNW+A ++P AR LD F G
Sbjct: 2   ARNRPASGQVRIIAGQWRSRKLPIQDLEGLRPTTDRVRETLFNWIAGDLPGARVLDCFGG 61

Query: 70  SGGLGFECASRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFLR-QSGKPY 128
           SG L FE  SR A    + EL   A +QLK N+ +LK +  E++  D L  L+    + +
Sbjct: 62  SGALCFEALSRYAKYAKVFELQTGAAKQLKQNLATLKCDCAEVVQGDTLVQLKTPPTEGF 121

Query: 129 DVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHLHREKSAGQ 188
           DVVFIDPPFR+GL Q     L    WL   A++Y+E E+E P   LP HW   +EK AGQ
Sbjct: 122 DVVFIDPPFRKGLAQACIDGLNDQAWLNEDALVYVETEREHPPLNLPGHWLPLKEKQAGQ 181

Query: 189 VCYRLF 194
           V YRL+
Sbjct: 182 VTYRLY 187