Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 45.8 bits (107), Expect = 1e-09
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 10/116 (8%)

Query: 53  WLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQSLKAENIEL 112
           W  +  P +   DLF G GG G  CAS++   +T +E+   A    K + ++L  + +  
Sbjct: 228 WTRELAPTS-IWDLFCGVGGFGLHCASKEV-ALTGIEIEAEAIACAKMSAETLGLDKVRF 285

Query: 113 IHTDALAFL---RQSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIEC 165
              D+ +F    R   KP +++ ++PP R+G+ +     L +    AP+A++Y  C
Sbjct: 286 TALDSTSFASDSRGEEKP-ELIIVNPP-RRGIGEALCHSLSE---FAPKAILYSSC 336