Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., conserved hypothetical protein TIGR00095 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  188 bits (477), Expect = 6e-53
 Identities = 91/177 (51%), Positives = 121/177 (68%), Gaps = 1/177 (0%)

Query: 19  VRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCLDLFAGSGGLGFECA 78
           +RII+G WR RKLP+HD +GLRPTTDRV+ETLFNWLA ++ +AR LD F GSG L  E  
Sbjct: 1   MRIIAGQWRSRKLPIHDLDGLRPTTDRVRETLFNWLANDIAHARVLDCFGGSGALALESL 60

Query: 79  SRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFLRQS-GKPYDVVFIDPPF 137
           SR A+   ++EL   A  QLK N+ +LK +  E+I+ D L  L+    + +DVVFIDPPF
Sbjct: 61  SRYASYAKIIELQRTAAMQLKANLNTLKCDKAEVINADTLVVLQNGCDQGFDVVFIDPPF 120

Query: 138 RQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHLHREKSAGQVCYRLF 194
           R+GL ++T QLL+  GWL   A+IY+E E EL    +P  W   ++K+ GQV YRL+
Sbjct: 121 RKGLAEKTIQLLDSKGWLNDGALIYVEIEAELTQMAIPASWQPLKDKTTGQVSYRLY 177