Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 51.6 bits (122), Expect = 2e-11
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 10/124 (8%)

Query: 45  RVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQS 104
           ++ +T   W+ +  P +   DLF G GG G  CAS+    +T +E+   A    K + Q 
Sbjct: 223 KLYQTAREWVGEFAPKS-LWDLFCGVGGFGLHCASKDI-PLTGIEIEAEAIACAKMSAQM 280

Query: 105 LKAENIELIHTDALAFLR---QSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMI 161
           +  +N++ +  D+  F +    + KP D++ ++PP R+G+ +     L +    AP+A++
Sbjct: 281 MGLDNVQFMALDSTDFAKGDAAATKP-DLIIVNPP-RRGIGESLCDALSE---FAPRAIL 335

Query: 162 YIEC 165
           Y  C
Sbjct: 336 YSSC 339