Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase from Klebsiella michiganensis M5al

 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 45  RVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQS 104
           R+  T  +W+ Q +P     DLF G GG G  CAS +  ++T +E+ P A    K +   
Sbjct: 220 RLYATARDWVRQ-LPVNHMWDLFCGVGGFGLHCASPEM-RLTGIEIAPEAIACAKQSAAE 277

Query: 105 LKAENIELIHTDALAFLRQSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIE 164
           L   N+     D+  F    G+  D+V ++PP R+G+  E    L +   +AP+ +IY  
Sbjct: 278 LGLHNLHFQALDSTQFATGEGEIPDLVLVNPP-RRGIGDELCAYLSR---MAPEFIIYSS 333

Query: 165 C 165
           C
Sbjct: 334 C 334