Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 204 a.a., methyltransferase from Burkholderia phytofirmans PsJN

 Score =  142 bits (357), Expect = 5e-39
 Identities = 88/199 (44%), Positives = 109/199 (54%), Gaps = 7/199 (3%)

Query: 5   RQPNPSQKKAPTGQVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCL 64
           R    S K      +RII G W+   LPV D +GLRPT DRV+ETLFNWL Q++   RCL
Sbjct: 8   RAHGASSKGGKPHAIRIIGGDWKRTPLPVLDLDGLRPTPDRVRETLFNWLGQDLDGQRCL 67

Query: 65  DLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFLRQS 124
           DLFAGSG LGFE ASR A +V M+E N  A  QL+ N + L A  IE+   D L  L  S
Sbjct: 68  DLFAGSGALGFEAASRGAARVLMVERNARAAGQLRANQERLSARTIEIAEADGLR-LAAS 126

Query: 125 GKP--YDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIECEKELPL--TELPPHWHL 180
             P  +DVVF+DPPF   LL +   L      +A    +Y+E    L L   E    W +
Sbjct: 127 LAPGSFDVVFLDPPFGDDLLGKALTLAAP--LVAADGFLYVEAGDALELAGNEALAGWEI 184

Query: 181 HREKSAGQVCYRLFIREEQ 199
            R+  AG V + L  RE +
Sbjct: 185 VRQGKAGAVHFHLLQRENK 203