Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query: 45  RVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQS 104
           ++ +T   W+A   P A   DLF G GG G  CA++    +T +E+   A    K + Q 
Sbjct: 227 KLYQTAREWVADFAP-ASLWDLFCGVGGFGLHCAAKDI-PLTGIEIEAEAIACAKMSAQL 284

Query: 105 LKAENIELIHTDALAFLRQSG---KPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMI 161
           +  + +E +  D+  F +      KP +++ ++PP R+G+ +     L +    AP+A++
Sbjct: 285 MGLDKVEFMALDSTDFAKGEAAQTKP-ELIIVNPP-RRGIGESLCHSLSE---FAPKAIL 339

Query: 162 YIEC 165
           Y  C
Sbjct: 340 YSSC 343