Pairwise Alignments

Query, 205 a.a., homoserine/homoserine lactone efflux protein from Vibrio cholerae E7946 ATCC 55056

Subject, 207 a.a., transporter, LysE family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 93.6 bits (231), Expect = 2e-24
 Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 3/203 (1%)

Query: 2   DIHVWLAYLLTAVVFSLAPGSGTVNSISNGLSYGTRHSLGAIIGLQIGLACHIVLVGIGI 61
           D  +   ++ T    ++ PG     +++ G+S G R +L  ++G  IG+A       +G+
Sbjct: 3   DFALLAVFIPTFFFVAITPGMCMTLAMTLGMSIGVRRTLWMMLGELIGVALVATAAVMGV 62

Query: 62  GALVAQSALAFTLIKWIGAAYLVWLGIQKWRDR---APLTATTTSHELSQAALLRKAVLI 118
            +++      F + KW+G  YL ++G+Q WR R   A L+   T+  +S   L+ +  + 
Sbjct: 63  ASIMLNYPEVFQIFKWVGGLYLGYIGVQMWRARGKMAILSDDKTNPRVSNLTLISQGFIT 122

Query: 119 NLTNPKSIVFLVALFPQFIDPTRDHWPQFLVLGITTVTIDAIVMFGYTALAAQLGRYIRS 178
            + NPK   F+V+L P FI+  R+  PQ L L    +  +   M  Y +    L  ++  
Sbjct: 123 AIANPKGWAFMVSLLPPFINAEREVAPQLLALLSIIMVTEFTSMLAYASGGKSLRIFLSR 182

Query: 179 PNIMTRMNKLFGSMFMGCGMLLA 201
            + +  +N++ GS+ +G G+ LA
Sbjct: 183 GDNIRWLNRIAGSLMIGVGIWLA 205