Pairwise Alignments

Query, 205 a.a., homoserine/homoserine lactone efflux protein from Vibrio cholerae E7946 ATCC 55056

Subject, 207 a.a., transporter, LysE family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (280), Expect = 5e-30
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 3/205 (1%)

Query: 1   MDIHVWLAYLLTAVVFSLAPGSGTVNSISNGLSYGTRHSLGAIIGLQIGLACHIVLVGIG 60
           M    WL Y    V+  ++PG   + S+S+G+ +G + S+   +G        +     G
Sbjct: 1   MQTETWLLYFFAIVLIGISPGPIAMLSMSHGIHFGKKRSIATGLGSVSAALILMAASAAG 60

Query: 61  IGALVAQSALAFTLIKWIGAAYLVWLGIQKWRDRAP---LTATTTSHELSQAALLRKAVL 117
           +GA+++ S   FT++KW GAAYLV+LGI+    +     L    T  + +   L ++A L
Sbjct: 61  LGAIISASEYGFTILKWCGAAYLVFLGIKLLLTKQQGQTLEVVKTEGKGTLKQLFKQAFL 120

Query: 118 INLTNPKSIVFLVALFPQFIDPTRDHWPQFLVLGITTVTIDAIVMFGYTALAAQLGRYIR 177
           + ++NPK ++F  ALFPQFID T    PQ  +L +T   +D   +  Y ++A  L   ++
Sbjct: 121 VGISNPKDLLFFAALFPQFIDLTAPQLPQLTILALTWALVDFSFVMIYASMANVLAPSLK 180

Query: 178 SPNIMTRMNKLFGSMFMGCGMLLAT 202
           + N +   ++  G +F+    +L +
Sbjct: 181 ASNKLHWFDRTSGGVFLTLAAILVS 205