Pairwise Alignments

Query, 829 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N2E2

 Score =  109 bits (272), Expect = 6e-28
 Identities = 112/465 (24%), Positives = 204/465 (43%), Gaps = 20/465 (4%)

Query: 375 SYPEGMTSPLFNLIRHAFHDLDAMTDNLAQQIRAQTSLLTASYRRDRRTGLPNR----VV 430
           S PE   +P    +  A + +      L Q+   ++  L     +D  TGL NR    + 
Sbjct: 194 SLPELPRTPELRRVVQAMNQMVEKLKALFQEQAERSEKLRVESYQDNLTGLANRRYFEMQ 253

Query: 431 LRERLAN--FAANEHLIALKVTHFNQINEKYGYPVGDKLLRDLSEQFQVFLDQKLAGQSG 488
           L  R++N   A++ +L+ L+V     +N++ G    D+LL+ + EQ      +     + 
Sbjct: 254 LNARVSNPEQASSGYLLLLRVKDLAGLNQRLGGQRTDQLLQAVGEQLLRECARYPETHNL 313

Query: 489 LYAIGVGEWATVFRAKLDGKSIHSHFYQFVEQLEHVNFEPYGLPNVDYLSI-SLCAGLVS 547
           +  I  GE+A +    +  +++     Q  + LE      +     D  S+ S+      
Sbjct: 314 VTRIRGGEFAVLAPGLVREEAL-----QLAQNLEAALASLHATGATDVASVASIGLAPFV 368

Query: 548 QGDFAEHSPDELLLRAIEARRYAFNNNHHFCNAARLKVQESVRQERLNWLSRVSRAVVRD 607
            GD    SP  +L    +A   A +               SV  +   W + + +A+   
Sbjct: 369 HGD----SPQAVLQLGDQALAQAESQGEPGWACLDHSAVASVGDDHHAWHTLLDQALNHQ 424

Query: 608 DVVVYAQPICQAR-SHIVASYECLVRIEDE-GEIILPGNFLPIITDTHLYTRLSRQMITH 665
              +Y QP+  AR + +V  Y+ L R+ DE G+ I  G FLP +       RL R M+  
Sbjct: 425 RFELYFQPVVAARDTQVVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLEQ 484

Query: 666 TFNMMRHRPEAFSINLSPQDLMSERTLQHLEAAIKSVAD-PARVGLEVLESEQIKDYGRM 724
               M    ++ ++NLS   L   + L  +   +++ ++  +R+ LE+ E EQ+ +   +
Sbjct: 485 VLRQMAGHEQSLALNLSSATLADPQALNKIFEILRAHSNLGSRLTLEIGE-EQLPEQAVL 543

Query: 725 IEVCNHFRTLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQL 784
            ++    R LG ++ +  FG  +S I  + +L    +K+DGS IR IDQ+  +R   E +
Sbjct: 544 EQLTRRLRELGFSLSLQRFGGRFSMIGNLSRLGLAYLKIDGSYIRAIDQESDKRLFIEAI 603

Query: 785 VKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRPSRLG 829
            +    ++   +AE V  +    +  +MG+  +QG  +G P R G
Sbjct: 604 QRAAHSIDLPLIAERVETEGELAVIREMGLFGVQGQLVGEPRRWG 648