Pairwise Alignments

Query, 829 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  114 bits (286), Expect = 1e-29
 Identities = 102/421 (24%), Positives = 188/421 (44%), Gaps = 25/421 (5%)

Query: 420 DRRTGLPNRVVLRER----LANFAANEH---LIALKVTHFNQINEKYGYPVGDKLLRDLS 472
           D    LPNR++  ER    L    A++    L+ + + HF  INE  G+ +GD LL+ +S
Sbjct: 208 DPLVNLPNRLLFTERAKQDLERARAHKRSGALLLIDLDHFKDINESLGHSLGDALLQAVS 267

Query: 473 EQFQVFLDQKLAGQSGLYAIGVGEWATVFRAKLDGKSIHSHFYQFVEQLEHVNFEPYGLP 532
            +    L++ +     L  +G  E+A +     +G          +  L+ +N E + + 
Sbjct: 268 TRLSEHLEKGMT----LGRLGGDEFALL----CEGYGAEKATALALRILDRLN-ESFHIG 318

Query: 533 NVDYLSISLCAGLVSQGDFAEHSPDELLLRAIEARRYAFNNNHHFCNAARLKVQESVRQE 592
           + +  S S   G+V      +    E L+R  ++  +   ++     A   +   S  ++
Sbjct: 319 DQELFS-SASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEELTSQARQ 377

Query: 593 RLNWLSRVSRAVVRDDVVVYAQPICQARSHIVASYECLVRIED-EGEIILPGNFLPIITD 651
           R+  ++ + +A+ +  + ++ QPI   R   ++ +E LVR +  E  +I PG F+PI  +
Sbjct: 378 RVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFIPIAEE 437

Query: 652 THLYTRLSRQMITHTFNMMRH-----RPEAF-SINLSPQDLMS-ERTLQHLEAAIKSVAD 704
           T L + +   ++    N  R       P  F ++N+S +   + E  LQ      +S  +
Sbjct: 438 TGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVATILARSGLE 497

Query: 705 PARVGLEVLESEQIKDYGRMIEVCNHFRTLGATIIVDDFGSGYSNIDEIVKLEPQVIKLD 764
              + LE+ ES  ++D    +E+    R LG  + +DDFG+GYS++  + ++    +K+D
Sbjct: 498 ARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVHKLKID 557

Query: 765 GSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGR 824
              +R +  D     I   ++ L   L  K VAE +              DY QGY   R
Sbjct: 558 QGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQGYGFAR 617

Query: 825 P 825
           P
Sbjct: 618 P 618