Pairwise Alignments

Query, 829 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1238 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  111 bits (278), Expect = 2e-28
 Identities = 108/456 (23%), Positives = 202/456 (44%), Gaps = 38/456 (8%)

Query: 390  HAFHDLDAMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLANFAANEH------ 443
            H  H + + TD    + +A   +L      D  TGLPNR++  +RL   AA         
Sbjct: 783  HLTHMVASQTD--VSESKAFEEMLLQQATHDALTGLPNRLLFLDRLDQAAARARGGGSPI 840

Query: 444  -LIALKVTHFNQINEKYGYPVGDKLLRDLSEQFQVFLDQKLAGQSGLYAIGVGEWATVFR 502
             ++ + + +F  IN+ + +  GD +L+  + + Q    Q +     +  +   E+  +  
Sbjct: 841  AVLFIDLDNFKAINDGFSHSEGDAVLQIAAGRLQ----QCIQEHETVARLSSDEFV-ILL 895

Query: 503  AKLDGKSIHSHFYQFVEQLEHVNFEPYGLPNVDYLSISLCAGL-VSQGDFAEHSPDELL- 560
              LD +S        ++ L    FE  G P      I L A + V+       S  ELL 
Sbjct: 896  IDLDVQSKARVKAAMIQSLMAKPFEVMGNP------IELTASIGVATFPHDGQSGSELLQ 949

Query: 561  ---LRAIEARRYAFNNNHHFCNAARLKVQESVRQERLNWLSRVSRAVVRDDVVVYAQPIC 617
               L    A++   N    F  A R +++  +  E+      + +A++ + + +Y QP  
Sbjct: 950  AADLAVCAAKQQGKNLWCSFSEAMREQLRSRIDIEK-----DLRQALIDNSLELYFQPQV 1004

Query: 618  QARSHIVASYECLVRIED-EGEIILPGNFLPIITDTHLYTRLSRQMITHTFNMMRHRPE- 675
               +H +  +E LVR    E  ++ PG F+PI  ++ L   +   ++      +R   + 
Sbjct: 1005 DLVTHRLLGFETLVRWNHPERGLVAPGEFIPIAEESDLIDAIGLWVMRAAGLTLRRWIDH 1064

Query: 676  -----AFSINLSPQDLMSERTLQHLEAAIKSVA-DPARVGLEVLESEQIKDYGRMIEVCN 729
                 + S N+S +  + +     L   ++     P ++ +E+ ES  I+   R ++   
Sbjct: 1065 EGFTGSLSFNISARQFIRQNIFLKLFDVLQEFQIPPHQLEIELTESSLIESPERFVQWLQ 1124

Query: 730  HFRTLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQ 789
              R++G  + +DDFG+GYS++  + +L    +K+D S IR++  D   + I + +V + +
Sbjct: 1125 EARSMGFQVALDDFGTGYSSLGYLKRLPINALKIDRSFIRDLPHDHDDQAIVQAIVAMAK 1184

Query: 790  VLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRP 825
            VL  +T+AE V         E +G D +QG+F G P
Sbjct: 1185 VLKLRTIAEGVERLEQAAFLEAIGCDAVQGFFYGPP 1220